LICENSE
README.rst
pyproject.toml
setup.py
accession/__init__.py
accession/__main__.py
accession/accession.py
accession/accession_steps.py
accession/analysis.py
accession/backends.py
accession/caper_helper.py
accession/cloud_tasks.py
accession/encode_models.py
accession/file.py
accession/helpers.py
accession/logger_factory.py
accession/metadata.py
accession/preflight.py
accession/task.py
accession.egg-info/PKG-INFO
accession.egg-info/SOURCES.txt
accession.egg-info/dependency_links.txt
accession.egg-info/entry_points.txt
accession.egg-info/not-zip-safe
accession.egg-info/requires.txt
accession.egg-info/top_level.txt
accession_steps/__init__.py
accession_steps/atac_steps.json
accession_steps/bulk_rna_no_kallisto_steps.json
accession_steps/bulk_rna_steps.json
accession_steps/chip_map_only_steps.json
accession_steps/control_chip_pbam_steps.json
accession_steps/control_chip_steps.json
accession_steps/dnase_no_footprints_steps.json
accession_steps/dnase_starch_from_bam_steps.json
accession_steps/dnase_steps.json
accession_steps/histone_chip_pbam_steps.json
accession_steps/histone_chip_peak_call_only_steps.json
accession_steps/histone_chip_steps.json
accession_steps/long_read_rna_no_spikeins_steps.json
accession_steps/long_read_rna_one_spikein_steps.json
accession_steps/long_read_rna_two_or_more_spikeins_steps.json
accession_steps/mint_chip_peak_call_only_steps.json
accession_steps/mint_chip_steps.json
accession_steps/mirna_steps.json
accession_steps/tf_chip_bwa_control_fastqs_steps.json
accession_steps/tf_chip_pbam_steps.json
accession_steps/tf_chip_peak_call_only_steps.json
accession_steps/tf_chip_steps.json
accession_steps/wgbs_steps.json
tests/__init__.py
tests/conftest.py
tests/fixtures.py
tests/test_accession.py
tests/test_accession_chip.py
tests/test_accession_local_workflow.py
tests/test_accession_main.py
tests/test_accession_mirna.py
tests/test_accession_steps.py
tests/test_accession_wgbs.py
tests/test_analysis.py
tests/test_backends.py
tests/test_cloud_tasks.py
tests/test_encode_models.py
tests/test_file.py
tests/test_helpers.py
tests/test_logger_factory.py
tests/test_metadata.py
tests/test_preflight.py
tests/test_task.py